A comprehensive user manual for COTEGIN is currently under preparation.
The platform documentation will include:
- Installation and system requirements
- Project creation and management
- Reference genome configuration
- RNA-seq alignment workflows
- Read filtering and preprocessing
- Gene expression quantification
- Differential expression analysis
- Functional enrichment analysis
- Coexpression analysis
- Differential coexpression and transcriptomic rewiring
- Network visualization and exploration
- Result export and reporting
COTEGIN is designed to provide an integrated workflow from raw RNA-seq data to biologically interpretable results through a user-friendly graphical environment.
The complete documentation will be made available following the publication of the platform.